Cell-ACDC
A GUI-based Python framework for segmentation, tracking, cell cycle annotations and quantification of microscopy data
Source code on GitHub
Written in Python 3 by Francesco Padovani and Benedikt Mairhoermann.
Core developers: Francesco Padovani, Timon Stegmaier, and Benedikt Mairhoermann.
Tip
Check out our Video Tutorials page to find video tutorials that will help you get started with Cell-ACDC.
Sphereoid segmentation
Segment and quantify the spheroid in 3D
Yeast segmentation
Segment, track, and annotate cell cycle
Nuclei segmentation in C. elegans
Segment sub-set of nuclei in multi-cellular organisms
Compute measurements
Easily compute several intesity and morphological measurements
Cell-ACDC launcher
Run batch-processing and utilities from the launcher
Contents
- Overview
- Installation
- From 0 to Cell-ACDC mastery: A complete guide
- Video tutorials
- Folder structure
- Create Data Structure with ImageJ/Fiji macros
- How to contribute to Cell-ACDC
- GUI tools
- Models for automatic segmentation and tracking
- Scripts to correct shifts in bidirectional scanning
- Cell-ACDC output data
- Troubleshooting
- Versions
- Scientific publications where Cell-ACDC was used
- Resources
- Citation