Scientific publications where Cell-ACDC was used

Citations per year from Google Scholar

Citations per year. Data from Google Scholar.

Publications that used Cell-ACDC, per year

Publications that used Cell-ACDC, per year.

In the following publications, authors used Cell-ACDC to analyse microscopy data and obtain biological insights:

  1. Saydee-Onwubiko, U. N., et al. Apoptosis promotes fertility in Caenorhabditis elegans by maintaining functional germline morphology. Development (2026) DOI: 10.1242/dev.205442.

  2. Narduzzi, G., et al. Weak interactions drive selective proteome demixing and tune the differential response to environmental perturbations. bioRxiv (2026) DOI: 10.64898/2026.07.22.739830.

  3. Smith, W., et al. Proximity labeling at H3K9me3 reveals VRK-1 regulate global chromatin distribution in C. elegans. bioRxiv (2026) DOI: 10.64898/2026.07.07.737140.

  4. Serna, S. E., et al. ABA-AA: A simple, reversible, and non-toxic anchor-away system for effective nuclear protein depletion. Cell Reports Methods (2026) DOI: 10.1016/j.crmeth.2026.101517.

  5. Moukham, H., et al. SNF1/AMPK controls its own localization by phosphorylating its activating kinase Sak1. iScience (2026) DOI: 10.1016/j.isci.2026.116357.

  6. Vandal, E. S., et al. The role of cell growth rate on accumulation of the mitotic cyclin Cdc13 in fission yeast. bioRxiv (2026) DOI: 10.64898/2026.05.14.724355.

  7. Kim, J., et al. A Fkh1/2 binding site array in the WHI5 promoter drives sub-scaling transcription. Cell Reports (2026) DOI: 10.1016/j.celrep.2026.117304.

  8. Benedikt, A. et al. Retrograde signalling mediates cellular adaptation to mitochondrial DNA copy number alterations. bioRxiv (2026) DOI: 10.64898/2026.04.22.720057.

  9. Lanz, M. C., et al. Cell enlargement drives aging-associated proteome remodeling and shortens replicative lifespan. bioRxiv (2026) DOI: 10.64898/2026.02.15.706013.

  10. Lambiase, A., et al. Acteoside exerts neuroprotective effects by preventing α-synuclein aggregation and oxidative stress in models of Parkinson’s disease. Neurotherapeutics (2025) DOI: 10.1016/j.neurot.2025.e00825.

  11. Pabst, F. R., et al. Methionine synthase reductase regulates heterochromatin independently of methionine synthesis through mitochondrial homeostasis. bioRxiv (2025) DOI: 10.64898/2025.12.19.695597.

  12. Gao, X., et al. Yeast growth is controlled by the proportional scaling of mRNA and ribosome concentrations. arXiv (2025) DOI: 10.48550/arXiv.2508.14997.

  13. Garrigós, V., et al. Tsa1-Mediated Regulation of PKA Tunes Trehalose Metabolism in Saccharomyces cerevisiae. bioRxiv (2025) DOI: 10.1101/2025.11.26.690464.

  14. Muñoz-Barrera, M., et al. HLH-30/TFEB is necessary for chromatin reorganization and maintenance of cell quiescence during starvation in C. elegans. bioRxiv (2025) DOI: 10.1101/2025.10.31.685810.

  15. Geetha, S. S., et al. Bloom helicase contributes to successful crossover formation with both catalytic and structural roles in Caenorhabditis elegans meiosis. Nucleic Acids Res. (2025) DOI: 10.1093/nar/gkaf1030.

  16. Akanksha, A., et al. Microfluidic analysis of salt-stress-mediated antibiotic tolerance in Mycobacterium smegmatis. Lab on a Chip (2025) DOI: 10.1039/D5LC00713E.

  17. Proulx-Giraldeau, F. , et al. Division Asymmetry Drives Cell Size Variability in Budding Yeast. bioRxiv (2025) DOI: 10.1101/2025.10.22.683920.

  18. Kukhtevich, I. , et al. The origin of septin ring size control in budding yeast. The EMBO Journal (2025) DOI: 10.1038/s44318-025-00571-5.

  19. Conti, M. M. , et al. Dynamic phosphorylation of Hcm1 promotes fitness in chronic stress. PLOS Genetics (2025) DOI: 10.1371/journal.pgen.1011874.

  20. Seshadri, A. , et al. Exonuclease action of replicative polymerase gamma drives damage-induced mitochondrial DNA clearance. EMBO Reports (2025) DOI: 10.1038/s44319-025-00380-1.

  21. Al-Refaie, N. , et al. Fasting shapes chromatin architecture through an mTOR/RNA Pol I axis. Nat. Cell Biol. 1–15 (2024) DOI: 10.1038/s41556-024-01512-w.

  22. Lanz, M. C. , et al. Genome dilution by cell growth drives starvation-like proteome remodeling in mammalian and yeast cells. Nat. Struct. Mol. Biol. (2024) DOI: 10.1038/s41594-024-01353-z.

  23. Xiao, J., Turner, J. J., Kõivomägi, M. & Skotheim, J. M. Whi5 hypo- and hyper-phosphorylation dynamics control cell-cycle entry and progression. Curr. Biol. 34, 2434-2447.e5 (2024).DOI: 10.1016/j.cub.2024.04.052.

  24. Vitacolonna, M. , et al. A multiparametric analysis including single-cell and subcellular feature assessment reveals differential behavior of spheroid cultures on distinct ultra-low attachment plate types. Front. Bioeng. Biotechnol. 12, (2024) DOI: 10.3389/fbioe.2024.1422235.

  25. Roussou, R. , et al. Real-time assessment of mitochondrial DNA heteroplasmy dynamics at the single-cell level. EMBO J. 43, 5340–5359 (2024) DOI: 10.1038/s44318-024-00183-5.

  26. Padovani, F. , et al. SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification. bioRxiv (2024) DOI: 10.1101/2024.10.22.619610.

  27. Chatzitheodoridou, D., Bureik, D., Padovani, F., Nadimpalli, K. V. & Schmoller, K. M. Decoupled transcript and protein concentrations ensure histone homeostasis in different nutrients. EMBO J. 43, 5141–5168 (2024) DOI: 10.1038/s44318-024-00227-w.

  28. Chadha, Y., Kukhtevich, I. V., Padovani, F., Schneider, R. & Schmoller, K. M. Single-cell imaging reveals a key role of Bck2 in budding yeast cell size adaptation to nutrient challenges. bioRxiv (2024) DOI: 10.1101/2024.10.04.616606.

  29. Seel, A. , et al. Regulation with cell size ensures mitochondrial DNA homeostasis during cell growth. Nat. Struct. Mol. Biol. 30, 1549–1560 (2023) DOI: 10.1038/s41594-023-01091-8.

  30. Piñeiro López, C., Rodrigues Neves, A. R., Čavka, I., Gros, O. J. & Köhler, S. Segmentation of C. elegans germline nuclei. MicroPubl Biol. (2023) DOI: 10.17912/MICROPUB.BIOLOGY.001062.

  31. Freitag, M. , et al. Single-molecule experiments reveal the elbow as an essential folding guide in SMC coiled-coil arms. Biophys. J. 121, 4702–4713 (2022) DOI: 10.1016/j.bpj.2022.10.017.

  32. Kukhtevich, I. V. , et al. Quantitative RNA imaging in single live cells reveals age-dependent asymmetric inheritance. Cell Rep. 41, (2022) DOI: 10.1016/j.celrep.2022.111656.

  33. Padovani, F., Mairhörmann, B., Falter-Braun, P., Lengefeld, J. & Schmoller, K. M. Segmentation, tracking and cell cycle analysis of live-cell imaging data with Cell-ACDC. BMC Biol. 20, 174 (2022) DOI: 10.1186/s12915-022-01372-6.

  34. Schuh, L. , et al. Altered expression response upon repeated gene repression in single yeast cells. PLOS Comput. Biol. 18, e1010640 (2022) DOI: 10.1371/journal.pcbi.1010640.

Preprints published in peer-reviewed journals

The following preprints have been published in a peer-reviewed journal, and therefore excluded from the count:

  1. Saydee-Onwubiko, U. N., et al. Apoptosis promotes fertility in C. elegans by maintaining functional germline morphology. bioRxiv (2025) DOI: 10.1101/2025.10.22.683972.

  2. Wunder, T., et al. Conserved and Lineage-Specific Roles of KEA-Mediated Ion Homeostasis in Chlamydomonas. bioRxiv (2025) DOI: 10.64898/2025.12.03.692059.

  3. Kim, J., et al. A Fkh1/2 binding site array in the WHI5 promoter drives sub-scaling transcription. bioRxiv (2025) DOI: 10.1101/2025.10.10.681508.

  4. Dengler, L. , et al. When mitochondria fall apart: Unbalanced mitochondrial segregation triggers loss of mtDNA in the absence of mitochondrial fusion. bioRxiv (2025) DOI: 10.1101/2025.05.13.653688.

  5. Kukhtevich, I. , et al. The origin of septin ring size control in budding yeast. bioRxiv (2024) DOI: 10.1101/2024.07.30.605628.