Scientific publications where Cell-ACDC was used

In the following publications authors used Cell-ACDC to analyse microscopy data:

  1. Al-Refaie, N. et al. Fasting shapes chromatin architecture through an mTOR/RNA Pol I axis. Nat. Cell Biol. 1–15 (2024) DOI: 10.1038/s41556-024-01512-w.

  2. Lanz, M. C. et al. Genome dilution by cell growth drives starvation-like proteome remodeling in mammalian and yeast cells. Nat. Struct. Mol. Biol. (2024) DOI: 10.1038/s41594-024-01353-z.

  3. Xiao, J., Turner, J. J., Kõivomägi, M. & Skotheim, J. M. Whi5 hypo- and hyper-phosphorylation dynamics control cell-cycle entry and progression. Curr. Biol. 34, 2434-2447.e5 (2024).DOI: 10.1016/j.cub.2024.04.052.

  4. Vitacolonna, M. et al. A multiparametric analysis including single-cell and subcellular feature assessment reveals differential behavior of spheroid cultures on distinct ultra-low attachment plate types. Front. Bioeng. Biotechnol. 12, (2024) DOI: 10.3389/fbioe.2024.1422235.

  5. Roussou, R. et al. Real-time assessment of mitochondrial DNA heteroplasmy dynamics at the single-cell level. EMBO J. 43, 5340–5359 (2024) DOI: 10.1038/s44318-024-00183-5.

  6. Padovani, F. et al. SpotMAX: a generalist framework for multi-dimensional automatic spot detection and quantification. bioRxiv (2024) DOI: 10.1101/2024.10.22.619610.

  7. Kukhtevich, I. et al. The origin of septin ring size control in budding yeast. bioRxiv (2024) DOI: 10.1101/2024.07.30.605628.

  8. Chatzitheodoridou, D., Bureik, D., Padovani, F., Nadimpalli, K. V. & Schmoller, K. M. Decoupled transcript and protein concentrations ensure histone homeostasis in different nutrients. EMBO J. 43, 5141–5168 (2024) DOI: 10.1038/s44318-024-00227-w.

  9. Chadha, Y., Kukhtevich, I. V., Padovani, F., Schneider, R. & Schmoller, K. M. Single-cell imaging reveals a key role of Bck2 in budding yeast cell size adaptation to nutrient challenges. bioRxiv (2024) DOI: 10.1101/2024.10.04.616606.

  10. Seel, A. et al. Regulation with cell size ensures mitochondrial DNA homeostasis during cell growth. Nat. Struct. Mol. Biol. 30, 1549–1560 (2023) DOI: 10.1038/s41594-023-01091-8.

  11. Piñeiro López, C., Rodrigues Neves, A. R., Čavka, I., Gros, O. J. & Köhler, S. Segmentation of C. elegans germline nuclei. MicroPubl Biol. (2023) DOI: 10.17912/MICROPUB.BIOLOGY.001062.

  12. Freitag, M. et al. Single-molecule experiments reveal the elbow as an essential folding guide in SMC coiled-coil arms. Biophys. J. 121, 4702–4713 (2022) DOI: 10.1016/j.bpj.2022.10.017.

  13. Kukhtevich, I. V. et al. Quantitative RNA imaging in single live cells reveals age-dependent asymmetric inheritance. Cell Rep. 41, (2022) DOI: 10.1016/j.celrep.2022.111656.

  14. Padovani, F., Mairhörmann, B., Falter-Braun, P., Lengefeld, J. & Schmoller, K. M. Segmentation, tracking and cell cycle analysis of live-cell imaging data with Cell-ACDC. BMC Biol. 20, 174 (2022) DOI: 10.1186/s12915-022-01372-6.

  15. Schuh, L. et al. Altered expression response upon repeated gene repression in single yeast cells. PLOS Comput. Biol. 18, e1010640 (2022) DOI: 10.1371/journal.pcbi.1010640.